Gene

shtn1

ID
ZDB-GENE-121127-1
Name
shootin 1
Symbol
shtn1 Nomenclature History
Previous Names
  • gb:bc139653 (1)
  • si:ch73-56p18.4
Type
protein_coding_gene
Location
Chr: 17 Mapping Details/Browsers
Description
Predicted to enable actin filament binding activity. Acts upstream of or within posterior lateral line neuromast primordium migration. Predicted to be located in several cellular components, including growth cone; lamellipodium; and perikaryon. Predicted to be part of microtubule associated complex. Predicted to be active in axonal growth cone; cell leading edge; and cytoplasm. Is expressed in nervous system and optic vesicle. Orthologous to human SHTN1 (shootin 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
4 figures from 3 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
2 figures from Urasaki et al., 2019
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
ni101Allele with multiple variantsUnknownUnknownCRISPR
sa9054Allele with one point mutationUnknownPremature StopENU
sa42913Allele with one point mutationUnknownPremature StopENU
sa42914Allele with one point mutationUnknownPremature StopENU
sa44871Allele with one point mutationUnknownUnknownENU
syu203Allele with one insertionExon 4UnknownCRISPR
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Sequence Targeting Reagents
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Human Disease
Associated With shtn1 Human Ortholog
No data available
Associated With shtn1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Family IPR024849 Shootin-1
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Domain Details Per Protein
Protein Additional Resources Length Shootin-1
UniProtKB:Q6P0R8 InterPro 544
UniProtKB:A0A8M9PE57 InterPro 443
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 17
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA shtn1-201 (1) Ensembl 1,945 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH73-36G21ZFIN Curated Data
Contained inBACCH73-56P18ZFIN Curated Data
Has ArtifactESTfj79f04
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanSHTN110
Conserved genome location (synteny) (3)
Phylogenetic tree (1)
Amino acid sequence comparison (1)
MouseShtn119
Amino acid sequence comparison (2)
Conserved genome location (synteny) (3)
Phylogenetic tree (1)
Citations
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