Gene

rcn3

ID
ZDB-GENE-040625-175
Name
reticulocalbin 3, EF-hand calcium binding domain
Symbol
rcn3 Nomenclature History
Previous Names
  • wu:fb37d05
  • zgc:86646
Type
protein_coding_gene
Location
Chr: 3 Mapping Details/Browsers
Description
Predicted to enable calcium ion binding activity. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including epidermis; head mesenchyme; hypochord; mesoderm; and pectoral fin. Orthologous to human RCN3 (reticulocalbin 3).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
8 figures from 3 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa15966Allele with one point mutationUnknownSplice SiteENU
1 - 1 of 1
Show
Sequence Targeting Reagents
No data available
Human Disease
Associated With rcn3 Human Ortholog
No data available
Associated With rcn3 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Binding_site IPR018247 EF-Hand 1, calcium-binding site
Domain IPR002048 EF-hand domain
Homologous_superfamily IPR011992 EF-hand domain pair
1 - 3 of 3
Domain Details Per Protein
Protein Additional Resources Length EF-Hand 1, calcium-binding site EF-hand domain EF-hand domain pair
UniProtKB:I3IRX8 InterPro 315
UniProtKB:Q6IQR6 InterPro 316
1 - 2 of 2
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 3
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA rcn3-201 (1) Ensembl 1,587 nt
mRNA rcn3-202 (1) Ensembl 1,454 nt
1 - 2 of 2
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Construct Regulatory Region Coding Sequence Species Tg Lines Citations
Tg(rcn3:EGFP-CAAX)
  • rcn3
  • Danio rerio
1 (3)
Tg(rcn3:GAL4)
  • rcn3
  • Danio rerio
1 (9)
Tg(rcn3:GFP-rab32a)
  • rcn3
  • Danio rerio
1 (3)
Tg(rcn3:LY-mNeonGreen)
  • rcn3
  • Danio rerio
1Sánchez-Iranzo et al., 2022
Tg(rcn3:QF2)
  • rcn3
  • Danio rerio
1Norman et al., 2018
1 - 5 of 5
Show
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH73-367P23ZFIN Curated Data
Contained inBACDKEY-259B21ZFIN Curated Data
EncodesESTfb37d05
EncodesESTIMAGE:6893843Thisse et al., 2004
EncodescDNAMGC:86646ZFIN Curated Data
1 - 5 of 5
Show
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanRCN319
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
MouseRcn37
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
Citations
1 - 7 of 7
Show