Gene

ctnna1

ID
ZDB-GENE-991207-24
Name
catenin (cadherin-associated protein), alpha 1
Symbol
ctnna1 Nomenclature History
Previous Names
  • ctnna
  • dan[a]E
  • [a]E-catenin (1)
Type
protein_coding_gene
Location
Chr: 24 Mapping Details/Browsers
Description
Enables actin filament binding activity and cadherin binding activity. Involved in adherens junction maintenance and chordate embryonic development. Acts upstream of or within tissue homeostasis. Located in adherens junction; cell cortex; and microvillus. Part of catenin complex. Is expressed in DEL. Human ortholog(s) of this gene implicated in patterned macular dystrophy 2. Orthologous to human CTNNA1 (catenin alpha 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
3 figures from 3 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
11 figures from 3 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
ct3aGtTransgenic insertionUnknownUnknownDNA
hu10414Allele with one deletionUnknownFrameshift, Premature StopTALEN
la014591TgTransgenic insertionUnknownUnknownDNA
sa24534Allele with one point mutationUnknownSplice SiteENU
sa39460Allele with one point mutationUnknownSplice SiteENU
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
MO1-ctnna1N/ASchepis et al., 2012
MO2-ctnna1N/A (3)
TALEN1-ctnna1Han et al., 2016
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Human Disease
Associated With ctnna1 Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
patterned macular dystrophy 2 Alliance Macular dystrophy, patterned, 2 608970
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Associated With ctnna1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR000633 Vinculin, conserved site
Family IPR001033 Alpha-catenin
Family IPR006077 Vinculin/alpha-catenin
Homologous_superfamily IPR036723 Alpha-catenin/vinculin-like superfamily
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Domain Details Per Protein
Protein Additional Resources Length Alpha-catenin Alpha-catenin/vinculin-like superfamily Vinculin/alpha-catenin Vinculin, conserved site
UniProtKB:Q9PVF8 InterPro 907
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 24
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA ctnna1-201 (1) Ensembl 3,734 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
Constructs
Construct Regulatory Region Coding Sequence Species Tg Lines Citations
Tg(kdrl:ctnna-EGFP)
  • Danio rerio
1 (4)
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Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-214P17ZFIN Curated Data
Contained inBACCH211-271O13ZFIN Curated Data
Contained inBACDKEYP-36H4ZFIN Curated Data
Contained inFosmidZFOS-887A5ZFIN Curated Data
EncodescDNAMGC:76830ZFIN Curated Data
EncodescDNAMGC:175043ZFIN Curated Data
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanCTNNA15
Amino acid sequence comparison (1)
Other (1)
MouseCtnna118
Amino acid sequence comparison (2)
Other (1)
Citations
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