Gene

skib

ID
ZDB-GENE-990715-10
Name
v-ski avian sarcoma viral oncogene homolog b
Symbol
skib Nomenclature History
Previous Names
  • skiB
  • fc17g02
  • wu:fc17g02 (1)
  • wu:fk79g04
Type
protein_coding_gene
Location
Chr: 11 Mapping Details/Browsers
Description
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and SMAD binding activity. Acts upstream of or within cartilage development; dorsal/ventral pattern formation; and heart looping. Located in nucleus. Is expressed in central nervous system and telencephalon. Used to study craniosynostosis. Orthologous to human SKI (SKI proto-oncogene).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
2 figures from 2 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
2 figures from 2 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
la010625TgTransgenic insertionUnknownUnknownDNA
la010824TgTransgenic insertionUnknownUnknownDNA
la011985TgTransgenic insertionUnknownUnknownDNA
la017804TgTransgenic insertionUnknownUnknownDNA
nk15aEtTransgenic insertionUnknownUnknownDNA
sa9865Allele with one point mutationUnknownPremature StopENU
sa41845Allele with one point mutationUnknownPremature StopENU
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
MO1-skibN/A (2)
MO2-skibN/ACui et al., 2001
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Human Disease
Associated With skib Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
craniosynostosis Alliance Shprintzen-Goldberg syndrome 182212
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Associated With skib Via Experimental Models
Human Disease Fish Conditions Citations
craniosynostosis WT + MO1-skib standard conditions Doyle et al., 2012
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Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR003380 SKI/SNO/DAC domain
Domain IPR014890 c-SKI SMAD4-binding domain
Domain IPR047315 Ski oncogene-like, Dachshund-homology domain
Family IPR023216 Transcription regulator SKI/SnoN
Homologous_superfamily IPR009061 Putative DNA-binding domain superfamily
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Domain Details Per Protein
Protein Additional Resources Length c-SKI SMAD4-binding domain Putative DNA-binding domain superfamily SAND-like domain superfamily Ski-like, DNA-binding domain superfamily Ski oncogene-like, Dachshund-homology domain SKI/SNO/DAC domain Transcription regulator SKI/SnoN
UniProtKB:Q9YI02 InterPro 695
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 11
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA skib-201 (1) Ensembl 3,313 nt
mRNA skib-202 (1) Ensembl 771 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-156A5ZFIN Curated Data
Contained inBACDKEY-183J2ZFIN Curated Data
EncodesESTfc17g02ZFIN Curated Data
EncodesESTfk79g04ZFIN Curated Data
Has ArtifactESTfc87g11
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanSKI1
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
MouseSki4
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations
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