Gene

hoxa10b

ID
ZDB-GENE-990415-97
Name
homeobox A10b
Symbol
hoxa10b Nomenclature History
Previous Names
  • Hoxa-10
  • hoxa10
  • z-140
Type
protein_coding_gene
Location
Chr: 16 Mapping Details/Browsers
Description
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of DNA-templated transcription. Predicted to be active in nucleus. Is expressed in several structures, including CNS interneuron; chondroblast; fin; myoblast; and pectoral fin bud. Orthologous to human HOXA10 (homeobox A10).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
13 figures from 9 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
ihb432Allele with one deletionUnknownUnknownCRISPR
ihb433Allele with one deletionUnknownUnknownCRISPR
sa42704Allele with one point mutationUnknownPremature StopENU
sud159Allele with one deletionExon 1UnknownCRISPR
sud165bAllele with one deletionExon 1UnknownCRISPR
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Sequence Targeting Reagents
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Human Disease
Associated With hoxa10b Human Ortholog
No data available
Associated With hoxa10b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR017970 Homeobox, conserved site
Domain IPR001356 Homeodomain
Domain IPR020479 Homeodomain, metazoa
Family IPR046333 Homeobox protein Hox-A10/abdominal-B-like
Homologous_superfamily IPR009057 Homedomain-like superfamily
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Domain Details Per Protein
Protein Additional Resources Length Homedomain-like superfamily Homeobox, conserved site Homeobox protein Hox-A10/abdominal-B-like Homeodomain Homeodomain, metazoa
UniProtKB:A0A8M2B4B4 InterPro 346
UniProtKB:Q8AWY2 InterPro 330
UniProtKB:B3DGC1 InterPro 330
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 16
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA hoxa10b-201 (1) Ensembl 1,649 nt
mRNA ottdart00000001853 (1) Havana 1,232 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Construct Regulatory Region Coding Sequence Species Tg Lines Citations
Tg(hoxa10b-E1B:EGFP)
  • Danio rerio
1 (2)
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Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-45E15ZFIN Curated Data
Contained inPACBUSM1-31B14ZFIN Curated Data
EncodescDNAMGC:193973ZFIN Curated Data
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanHOXA107
Conserved genome location (synteny) (2)
Amino acid sequence comparison (1)
MouseHoxa106
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations
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