Gene

her1

ID
ZDB-GENE-980526-125
Name
hairy-related 1
Symbol
her1 Nomenclature History
Previous Names
  • etID309753.5 (1)
  • Hes7 (1)
  • id:ibd5086
Type
protein_coding_gene
Location
Chr: 5 Mapping Details/Browsers
Description
Enables identical protein binding activity and protein heterodimerization activity. Acts upstream of or within negative regulation of DNA-templated transcription and somite specification. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including germ ring; margin; mesoderm; presumptive mesoderm; and tail bud. Human ortholog(s) of this gene implicated in spondylocostal dysostosis 4. Orthologous to human HES7 (hes family bHLH transcription factor 7).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
123 figures from 79 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
2 figures from Choorapoikayil et al., 2012
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
ci301Allele with one deletionExon 2UnknownCRISPR
ci302Allele with one deletionExon 2UnknownCRISPR
hu2124Allele with one point mutationExon 2Premature StopENU
kt1060Allele with one deletionExon 2UnknownTALEN
sa40604Allele with one point mutationUnknownPremature StopENU
zf2173Allele with one insertionUnknownUnknownTALEN
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
CRISPR1-her1 (4)
MO1-her1N/A (7)
MO2-her1N/A (3)
MO3-her1N/A (4)
MO4-her1N/A (2)
MO5-her1N/A (3)
MO6-her1N/A (2)
TALEN1-her1 (3)
TALEN2-her1Yabe et al., 2023
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Human Disease
Associated With her1 Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
spondylocostal dysostosis 4 Alliance Spondylocostal dysostosis 4, autosomal recessive 613686
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Associated With her1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR003650 Orange domain
Domain IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
Family IPR050370 Hairy and Enhancer of Split/HEY-related
Homologous_superfamily IPR036638 Helix-loop-helix DNA-binding domain superfamily
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Domain Details Per Protein
Protein Additional Resources Length Hairy and Enhancer of Split/HEY-related Helix-loop-helix DNA-binding domain superfamily Myc-type, basic helix-loop-helix (bHLH) domain Orange domain
UniProtKB:Q90463 InterPro 328
1 - 1 of 1
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 5
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA her1-201 (1) Ensembl 1,780 nt
1 - 1 of 1
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Construct Regulatory Region Coding Sequence Species Tg Lines Citations
Tg1(-3.3her1:mCherry)
  • her1
  • Danio rerio
1 (2)
Tg2(-3.3her1:mCherry)
  • her1
  • Danio rerio
1 (2)
Tg(-2.9her1:mCherry)
  • her1
  • Danio rerio
1 (2)
Tg2(hsp70l:Venus-her1-UTR)
  • Danio rerio
3Tietz et al., 2020
Tg3(-3.3her1:mCherry)
  • her1
  • Danio rerio
1 (2)
Tg3(hsp70l:Venus-her1-UTR)
  • Danio rerio
3Tietz et al., 2020
Tg4(-3.3her1:mCherry)
  • her1
  • Danio rerio
1 (2)
Tg4(hsp70l:Venus-her1-UTR)
  • Danio rerio
3Tietz et al., 2020
Tg5(-3.3her1:mCherry)
  • her1
  • Danio rerio
1 (2)
Tg5(hsp70l:Venus-her1-UTR)
  • Danio rerio
2Tietz et al., 2020
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Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-283H6ZFIN Curated Data
EncodesESTeu148
    Thisse et al., 2005
    EncodesESTibd5086
    EncodescDNAMGC:193878ZFIN Curated Data
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    Sequences
    Orthology
    Comparative Orthology
    Alliance
    Gene Tree
    Ensembl
    Species Symbol Chromosome Accession # Evidence
    HumanHES717
    Amino acid sequence comparison (1)
    MouseHes711
    Amino acid sequence comparison (1)
    Citations
    1 - 10 of 174
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