Gene
her1
- ID
- ZDB-GENE-980526-125
- Name
- hairy-related 1
- Symbol
- her1 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 5 Mapping Details/Browsers
- Description
- Enables identical protein binding activity and protein heterodimerization activity. Acts upstream of or within negative regulation of DNA-templated transcription and somite specification. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including germ ring; margin; mesoderm; presumptive mesoderm; and tail bud. Human ortholog(s) of this gene implicated in spondylocostal dysostosis 4. Orthologous to human HES7 (hes family bHLH transcription factor 7).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 123 figures from 79 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- eu148 (7 images)
Wild Type Expression Summary
- All Phenotype Data
- 2 figures from Choorapoikayil et al., 2012
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Allele | Type | Localization | Consequence | Mutagen | Supplier |
---|---|---|---|---|---|
ci301 | Allele with one deletion | Exon 2 | Unknown | CRISPR | |
ci302 | Allele with one deletion | Exon 2 | Unknown | CRISPR | |
hu2124 | Allele with one point mutation | Exon 2 | Premature Stop | ENU | |
kt1060 | Allele with one deletion | Exon 2 | Unknown | TALEN | |
sa40604 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
zf2173 | Allele with one insertion | Unknown | Unknown | TALEN |
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Human Disease
Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
---|---|---|---|
spondylocostal dysostosis 4 | Alliance | Spondylocostal dysostosis 4, autosomal recessive | 613686 |
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Domain, Family, and Site Summary
Domain Details Per Protein
Protein | Additional Resources | Length | Hairy and Enhancer of Split/HEY-related | Helix-loop-helix DNA-binding domain superfamily | Myc-type, basic helix-loop-helix (bHLH) domain | Orange domain |
---|---|---|---|---|---|---|
UniProtKB:Q90463 | InterPro | 328 |
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Interactions and Pathways
No data available
Plasmids
No data available
Construct | Regulatory Region | Coding Sequence | Species | Tg Lines | Citations |
---|---|---|---|---|---|
Tg1(-3.3her1:mCherry) |
|
| 1 | (2) | |
Tg2(-3.3her1:mCherry) |
|
| 1 | (2) | |
Tg(-2.9her1:mCherry) |
|
| 1 | (2) | |
Tg2(hsp70l:Venus-her1-UTR) |
| 3 | Tietz et al., 2020 | ||
Tg3(-3.3her1:mCherry) |
|
| 1 | (2) | |
Tg3(hsp70l:Venus-her1-UTR) |
| 3 | Tietz et al., 2020 | ||
Tg4(-3.3her1:mCherry) |
|
| 1 | (2) | |
Tg4(hsp70l:Venus-her1-UTR) |
| 3 | Tietz et al., 2020 | ||
Tg5(-3.3her1:mCherry) |
|
| 1 | (2) | |
Tg5(hsp70l:Venus-her1-UTR) |
| 2 | Tietz et al., 2020 |
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Relationship | Marker Type | Marker | Accession Numbers | Citations |
---|---|---|---|---|
Contained in | BAC | CH211-283H6 | ZFIN Curated Data | |
Encodes | EST | eu148 | Thisse et al., 2005 | |
Encodes | EST | ibd5086 | ||
Encodes | cDNA | MGC:193878 | ZFIN Curated Data |
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Type | Accession # | Sequence | Length (nt/aa) | Analysis |
---|---|---|---|---|
RNA | RefSeq:NM_131078 (1) | 1773 nt | ||
Genomic | GenBank:BX537304 (2) | 157564 nt | ||
Polypeptide | UniProtKB:Q90463 (1) | 328 aa |
- Keseroglu, K., Zinani, O.Q.H., Keskin, S., Seawall, H., Alpay, E.E., Özbudak, E.M. (2023) Stochastic gene expression and environmental stressors trigger variable somite segmentation phenotypes. Nature communications. 14:64976497
- Yabe, T., Uriu, K., Takada, S. (2023) Ripply suppresses Tbx6 to induce dynamic-to-static conversion in somite segmentation. Nature communications. 14:21152115
- Bruton, F.A., Kaveh, A., Ross-Stewart, K.M., Matrone, G., Oremek, M.E.M., Solomonidis, E.G., Tucker, C.S., Mullins, J.J., Lucas, C.D., Brittan, M., Taylor, J.M., Rossi, A.G., Denvir, M.A. (2022) Macrophages trigger cardiomyocyte proliferation by increasing epicardial vegfaa expression during larval zebrafish heart regeneration. Developmental Cell. 57(12):1512-1528.e5
- Li, Y., Tang, C., Liu, F., Zhu, C., Liu, F., Zhu, P., Wang, L. (2022) DNA methylation safeguards the generation of hematopoietic stem and progenitor cells by repression of Notch signaling. Development (Cambridge, England). 149(10):
- Naganathan, S.R., Popović, M., Oates, A.C. (2022) Left-right symmetry of zebrafish embryos requires somite surface tension. Nature. 605(7910):516-521
- Özelçi, E., Mailand, E., Rüegg, M., Oates, A.C., Sakar, M.S. (2022) Deconstructing body axis morphogenesis in zebrafish embryos using robot-assisted tissue micromanipulation. Nature communications. 13:79347934
- Simsek, M.F., Chandel, A.S., Saparov, D., Zinani, O.Q.H., Clason, N., Özbudak, E.M. (2022) Periodic inhibition of Erk activity drives sequential somite segmentation. Nature. 613(7942):153-159
- Zhang, W., Scerbo, P., Delagrange, M., Candat, V., Mayr, V., Vriz, S., Distel, M., Ducos, B., Bensimon, D. (2022) Fgf8 dynamics and critical slowing down may account for the temperature independence of somitogenesis. Communications biology. 5:113
- Zinani, O.Q.H., Keseroğlu, K., Dey, S., Ay, A., Singh, A., Özbudak, E.M. (2022) Gene copy number and negative feedback differentially regulate transcriptional variability of segmentation clock genes. iScience. 25:104579
- Kaveh, A., Bruton, F.A., Oremek, M.E.M., Tucker, C.S., Taylor, J.M., Mullins, J.J., Rossi, A.G., Denvir, M.A. (2021) Selective CDK9 inhibition resolves neutrophilic inflammation and enhances cardiac regeneration in larval zebrafish. Development (Cambridge, England). 149(8):
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