Gene

shtn3

ID
ZDB-GENE-140106-61
Name
shootin 3
Symbol
shtn3 Nomenclature History
Previous Names
  • si:dkey-280e21.3 (1)
  • zmp:0000001101
Type
protein_coding_gene
Location
Chr: 14 Mapping Details/Browsers
Description
Acts upstream of or within posterior lateral line neuromast primordium migration. Predicted to be active in axonal growth cone; cell leading edge; and cytoplasm. Is expressed in neuromast and posterior lateral line primordium.
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Urasaki et al., 2019
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
1 Figure from Urasaki et al., 2019
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
ni102Allele with one deletionUnknownUnknownCRISPR
sa22479Allele with one point mutationUnknownSplice SiteENU
Zebrafish International Resource Center (ZIRC) (order this)
syu205Allele with one deletionExon 2UnknownCRISPR
China Zebrafish Resource Center (CZRC) (order this)
1 - 3 of 3
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
CRISPR1-shtn3Urasaki et al., 2019
CRISPR2-shtn3Zebrafish Nomenclature Committee
CRISPR3-shtn3
    		Saraswathy et al., 2024
    1 - 3 of 3
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    Human Disease
    Associated With shtn3 Human Ortholog
    No data available
    Associated With shtn3 Via Experimental Models
    No data available
    Gene Ontology
    Protein Domains
    Domain, Family, and Site Summary
    Type InterPro ID Name
    Family IPR024849 Shootin-1
    1 - 1 of 1
    Domain Details Per Protein
    Protein Additional Resources Length Shootin-1
    UniProtKB:A0A2Z6I959 InterPro 655
    UniProtKB:A0AB32T0R2 InterPro 654
    UniProtKB:A0AB32T0R3 InterPro 601
    UniProtKB:A0AB32T7P7 InterPro 659
    1 - 4 of 4
    Transcripts
    Genome Browsers
    Genome Build: GRCz11Chromosome: 14
    Type Name Annotation Method Has Havana Data Length (nt) Analysis
    mRNA si:dkey-280e21.3-201 (1)
    Ensembl
    		Ensembl 1,822 nt
    ZFIN BLAST
    mRNA si:dkey-280e21.3-202 (1)
    Ensembl
    		Ensembl 5,934 nt
    ZFIN BLAST
    mRNA si:dkey-280e21.3-203 (1)
    Ensembl
    		Ensembl 1,961 nt
    ZFIN BLAST
    1 - 3 of 3
    Interactions and Pathways
    No data available
    Antibodies
    No data available
    Plasmids
    No data available
    Constructs
    No data available
    Marker Relationships
    Relationship Marker Type Marker Accession Numbers Citations
    Contained inBACDKEY-280E21ZFIN Curated Data
    1 - 1 of 1
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    Sequences
    Type Accession # Sequence Length (nt/aa) Analysis
    RNARefSeq:XM_068213337 (1)5987 nt
    ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
    GenomicGenBank:BX511257 (1)166973 nt
    MegaBLASTEnsembl
    PolypeptideUniProtKB:A0AB32T7P7 (1)659 aa
    ZFIN BLASTSIB BLASTEnsembl Protein Blast
    Orthology
    Comparative Orthology
    Alliance
    No data available
    Citations
    TSV
    1 - 2 of 2
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    Your Input Welcome
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