Gene

trim54

ID
ZDB-GENE-041014-342
Name
tripartite motif containing 54
Symbol
trim54 Nomenclature History
Previous Names
  • MuRF3 (1)
  • si:dkey-221h15.2
Type
protein_coding_gene
Location
Chr: 20 Mapping Details/Browsers
Description
Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in innate immune response. Predicted to act upstream of or within cell differentiation. Predicted to be located in microtubule and nucleus. Predicted to be active in cytoplasm. Is expressed in gill; male organism; and muscle. Orthologous to human TRIM54 (tripartite motif containing 54).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
4 figures from 4 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
la021625TgTransgenic insertionUnknownUnknownDNA
sa23777Allele with one point mutationUnknownPremature StopENU
1 - 2 of 2
Show
Sequence Targeting Reagents
No data available
Human Disease
Associated With trim54 Human Ortholog
No data available
Associated With trim54 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR017907 Zinc finger, RING-type, conserved site
Domain IPR000315 B-box-type zinc finger
Domain IPR001841 Zinc finger, RING-type
Domain IPR017903 COS domain
Domain IPR027370 Zinc finger, RING-type, eukaryotic
1 - 5 of 9 Show all
Domain Details Per Protein
Protein Additional Resources Length B-box-type zinc finger COS domain E3 ubiquitin-protein ligases and FN3/SPRY domain-containing proteins TRIM54, RING finger, HC subclass Tripartite motif-containing protein 54, B-box-type 2 zinc finger Zinc finger, RING/FYVE/PHD-type Zinc finger, RING-type Zinc finger, RING-type, conserved site Zinc finger, RING-type, eukaryotic
UniProtKB:Q5RHH1 InterPro 359
1 - 1 of 1
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 20
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA trim54-201 (1) Ensembl 1,522 nt
mRNA trim54-202 (1) Ensembl 429 nt
1 - 2 of 2
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-243J20ZFIN Curated Data
Contained inBACDKEY-221H15ZFIN Curated Data
EncodescDNAMGC:162786ZFIN Curated Data
1 - 3 of 3
Show
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanTRIM542
Phylogenetic tree (1)
Conserved genome location (synteny) (1)
Amino acid sequence comparison (3)
MouseTrim545
Phylogenetic tree (1)
Conserved genome location (synteny) (1)
Amino acid sequence comparison (2)
Citations
1 - 9 of 9
Show