Gene

polr1d

ID
ZDB-GENE-040930-4
Name
RNA polymerase I and III subunit D
Symbol
polr1d Nomenclature History
Previous Names
  • im:7162148
  • zgc:136449 (1)
Type
protein_coding_gene
Location
Chr: 14 Mapping Details/Browsers
Description
Predicted to enable DNA binding activity and protein dimerization activity. Predicted to contribute to DNA-directed RNA polymerase activity. Acts upstream of or within cartilage development; embryonic viscerocranium morphogenesis; and ribosome biogenesis. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex and RNA polymerase III complex. Is expressed in eye; lens; midbrain hindbrain boundary; optic tectum; and pharyngeal arch. Used to study Treacher Collins syndrome. Human ortholog(s) of this gene implicated in Treacher Collins syndrome 2. Orthologous to human POLR1D (RNA polymerase I and III subunit D).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
2 figures from 2 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
12 figures from 4 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
hi2393TgTransgenic insertionIntron 1UnknownDNA
1 - 1 of 1
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Sequence Targeting Reagents
No data available
Human Disease
Associated With polr1d Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Treacher Collins syndrome 2 Alliance Treacher Collins syndrome 2 613717
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Associated With polr1d Via Experimental Models
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR008193 DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
Domain IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain
Family IPR022905 DNA-directed RNA polymerase subunit Rpo11-like
Family IPR033898 DNA-directed RNA polymerases I and III subunit AC19
Homologous_superfamily IPR036603 RNA polymerase, RBP11-like subunit
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Domain Details Per Protein
Protein Additional Resources Length DNA-directed RNA polymerase, RBP11-like dimerisation domain DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site DNA-directed RNA polymerases I and III subunit AC19 DNA-directed RNA polymerase subunit Rpo11-like RNA polymerase, RBP11-like subunit
UniProtKB:Q6DRI4 InterPro 112
UniProtKB:A0A8M2B3H3 InterPro 81
1 - 2 of 2
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 14
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA polr1d-201 (1) Ensembl 667 nt
1 - 1 of 1
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH73-50O20ZFIN Curated Data
Contained inBACCH73-119D10ZFIN Curated Data
EncodesESTIMAGE:7162148Thisse et al., 2004
EncodescDNAMGC:136449ZFIN Curated Data
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanPOLR1D13
Amino acid sequence comparison (1)
MousePolr1d5
Amino acid sequence comparison (1)
Citations
1 - 5 of 5
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