Gene
alk
- ID
- ZDB-GENE-031027-1
- Name
- ALK receptor tyrosine kinase
- Symbol
- alk Nomenclature History
- Previous Names
-
- chunp9946
- Type
- protein_coding_gene
- Location
- Chr: 17 Mapping Details/Browsers
- Description
- Predicted to enable transmembrane receptor protein tyrosine kinase activity. Involved in positive regulation of MAPK cascade and positive regulation of neurogenesis. Acts upstream of or within regulation of neuron differentiation. Predicted to be located in membrane. Predicted to be part of receptor complex. Predicted to be active in plasma membrane. Is expressed in brain; fin; heart; and testis. Human ortholog(s) of this gene implicated in alcohol dependence. Orthologous to human ALK (ALK receptor tyrosine kinase).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
Phenotype Summary
Mutations
Allele | Type | Localization | Consequence | Mutagen | Supplier |
---|---|---|---|---|---|
la020189Tg | Transgenic insertion | Unknown | Unknown | DNA | |
sa28927 | Allele with one point mutation | Unknown | Unknown | ENU | |
ya343 | Allele with one deletion | Unknown | Unknown | CRISPR |
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Targeting Reagent | Created Alleles | Citations |
---|---|---|
CRISPR1-alk | (2) | |
CRISPR2-alk | (2) | |
CRISPR3-alk | (2) | |
CRISPR4-alk | (2) | |
CRISPR5-alk | (2) | |
CRISPR6-alk | (2) | |
CRISPR7-alk | (2) | |
CRISPR8-alk | (2) | |
CRISPR9-alk | Mo et al., 2017 | |
CRISPR10-alk | Mo et al., 2017 |
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Human Disease
Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
---|---|---|---|
{Neuroblastoma, susceptibility to, 3} | 613014 |
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Domain, Family, and Site Summary
Type | InterPro ID | Name |
---|---|---|
Active_site | IPR008266 | Tyrosine-protein kinase, active site |
Binding_site | IPR017441 | Protein kinase, ATP binding site |
Conserved_site | IPR002011 | Tyrosine-protein kinase, receptor class II, conserved site |
Domain | IPR000719 | Protein kinase domain |
Domain | IPR000998 | MAM domain |
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Domain Details Per Protein
Protein | Additional Resources | Length | Concanavalin A-like lectin/glucanase domain superfamily | Low-density lipoprotein (LDL) receptor class A repeat | MAM domain | Protein kinase, ATP binding site | Protein kinase domain | Protein kinase-like domain superfamily | Receptor Tyrosine Kinase | Serine-threonine/tyrosine-protein kinase, catalytic domain | Tyrosine-protein kinase, active site | Tyrosine-protein kinase, catalytic domain | Tyrosine-protein kinase, receptor class II, conserved site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
UniProtKB:A0AB13A9I6 | InterPro | 1705 | |||||||||||
UniProtKB:F8W3R9 | InterPro | 1705 |
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Interactions and Pathways
No data available
Plasmids
No data available
Construct | Regulatory Region | Coding Sequence | Species | Tg Lines | Citations |
---|---|---|---|---|---|
Tg(HSE:alk,CFP) |
|
| 2 | (2) |
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Relationship | Marker Type | Marker | Accession Numbers | Citations |
---|---|---|---|---|
Contained in | BAC | DKEYP-47F9 |
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Type | Accession # | Sequence | Length (nt/aa) | Analysis |
---|---|---|---|---|
RNA | RefSeq:NM_001423965 (1) | 7103 nt | ||
Genomic | GenBank:BX663528 (2) | 193986 nt | ||
Polypeptide | UniProtKB:A0AB13A9I6 (1) | 1705 aa |
Species | Symbol | Chromosome | Accession # | Evidence |
---|---|---|---|---|
Human | ALK | 2 | Nucleotide sequence comparison (1) |
- Wu, R.S., Lam, I.I., Clay, H., Duong, D.N., Deo, R.C., Coughlin, S.R. (2018) A Rapid Method for Directed Gene Knockout for Screening in G0 Zebrafish. Developmental Cell. 46:112-125.e4
- Mo, E.S., Cheng, Q., Reshetnyak, A.V., Schlessinger, J., Nicoli, S. (2017) Alk and Ltk ligands are essential for iridophore development in zebrafish mediated by the receptor tyrosine kinase Ltk. Proceedings of the National Academy of Sciences of the United States of America. 114(45):12027-12032
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Moreno-Mateos, M.A., Vejnar, C.E., Beaudoin, J.D., Fernandez, J.P., Mis, E.K., Khokha, M.K., Giraldez, A.J. (2015) CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo. Nature Methods. 12:982-8
- Challa, A.K., and Chatti, K. (2013) Conservation and Early Expression of Zebrafish Tyrosine Kinases Support the Utility of Zebrafish as a Model for Tyrosine Kinase Biology. Zebrafish. 10(3):264-74
- Varshney, G.K., Lu, J., Gildea, D., Huang, H., Pei, W., Yang, Z., Huang, S.C., Schoenfeld, D.S., Pho, N., Casero, D., Hirase, T., Mosbrook-Davis, D.M., Zhang, S., Jao, L.E., Zhang, B., Woods, I.G., Zimmerman, S., Schier, A.F., Wolfsberg, T., Pellegrini, M., Burgess, S.M., and Lin, S. (2013) A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome research. 23(4):727-735
- Yao, S., Cheng, M., Zhang, Q., Wasik, M., Kelsh, R., and Winkler, C. (2013) Anaplastic lymphoma kinase is required for neurogenesis in the developing central nervous system of zebrafish. PLoS One. 8(5):e63757
- Rodrigues, F.S., Yang, X., Nikaido, M., Liu, Q., and Kelsh, R.N. (2012) A Simple, Highly Visual in Vivo Screen for Anaplastic Lymphoma Kinase Inhibitors. ACS Chemical Biology. 7(12):1968-1974
- Wang, D., Jao, L.E., Zheng, N., Dolan, K., Ivey, J., Zonies, S., Wu, X., Wu, K., Yang, H., Meng, Q., Zhu, Z., Zhang, B., Lin, S., and Burgess, S.M. (2007) Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions. Proceedings of the National Academy of Sciences of the United States of America. 104(30):12428-12433
- Lo, J., Lee, S., Xu, M., Liu, F., Ruan, H., Eun, A., He, Y., Ma, W., Wang, W., Wen, Z., and Peng, J. (2003) 15,000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Genome research. 13(3):455-466
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