Gene

plxna4

ID
ZDB-GENE-030131-4663
Name
plexin A4
Symbol
plxna4 Nomenclature History
Previous Names
  • wu:fd49b01
  • wu:fe15f03
Type
protein_coding_gene
Location
Chr: 4 Mapping Details/Browsers
Description
Predicted to enable semaphorin receptor activity. Acts upstream of or within axon guidance; axonal defasciculation; and morphogenesis of a branching structure. Predicted to be located in membrane. Predicted to be part of semaphorin receptor complex. Predicted to be active in plasma membrane. Is expressed in several structures, including basal plate midbrain region; nervous system; optic vesicle; presumptive neural retina; and spinal cord neural tube. Orthologous to human PLXNA4 (plexin A4).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
28 figures from 10 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
4 figures from 2 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
ca307Allele with one delinsExon 1Frameshift, Premature StopCRISPR
la024435TgTransgenic insertionUnknownUnknownDNA
la024437TgTransgenic insertionUnknownUnknownDNA
la024438TgTransgenic insertionUnknownUnknownDNA
la028976TgTransgenic insertionUnknownUnknownDNA
la028977TgTransgenic insertionUnknownUnknownDNA
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Sequence Targeting Reagents
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Human Disease
Associated With plxna4 Human Ortholog
No data available
Associated With plxna4 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001627 Sema domain
Domain IPR002909 IPT domain
Domain IPR013548 Plexin, cytoplasmic RasGAP domain
Domain IPR016201 PSI domain
Domain IPR041019 Plexin, TIG domain 1
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Domain Details Per Protein
Protein Additional Resources Length Immunoglobulin E-set Immunoglobulin-like fold IPT domain Plexin, cytoplasmic RasGAP domain Plexin, cytoplasmic RhoGTPase-binding domain Plexin family Plexin repeat Plexin, TIG domain 1 Plexin, TIG domain 2 PSI domain Rho GTPase activation protein Sema domain Sema domain superfamily WD40/YVTN repeat-like-containing domain superfamily
UniProtKB:B3DK42 InterPro 1903
UniProtKB:Q6BEA0 InterPro 1903
UniProtKB:T1ECS6 InterPro 1903
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 4
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA plxna4-201 (1) Ensembl 8,676 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Construct Regulatory Region Coding Sequence Species Tg Lines Citations
Tg(isl1a-hsp70l:dnplxna4-GFP)
  • Danio rerio
3 (5)
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Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACDKEY-98L9ZFIN Curated Data
Contained inBACDKEY-247M22ZFIN Curated Data
EncodesESTeu1056Thisse et al., 2005
EncodesESTeu2440Thisse et al., 2005
EncodesESTfd49b01
EncodesESTfe15f03
EncodesESTwz10875
    ZFIN Curated Data
    EncodescDNAMGC:194791ZFIN Curated Data
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    Sequences
    Orthology
    Comparative Orthology
    Alliance
    Gene Tree
    Ensembl
    Species Symbol Chromosome Accession # Evidence
    HumanPLXNA47
    Conserved genome location (synteny) (1)
    Phylogenetic tree (1)
    Amino acid sequence comparison (1)
    MousePlxna46
    Phylogenetic tree (1)
    Conserved genome location (synteny) (1)
    Amino acid sequence comparison (2)
    Citations
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