Gene
suclg2
- ID
- ZDB-GENE-030114-3
- Name
- succinate-CoA ligase GDP-forming subunit beta
- Symbol
- suclg2 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 11 Mapping Details/Browsers
- Description
- Predicted to enable magnesium ion binding activity; purine ribonucleoside triphosphate binding activity; and succinate-CoA ligase activity. Predicted to be involved in tricarboxylic acid cycle. Predicted to act upstream of or within succinyl-CoA metabolic process. Predicted to be located in mitochondrion. Is expressed in lens; liver; pronephric duct; solid lens vesicle; and yolk syncytial layer. Orthologous to human SUCLG2 (succinate-CoA ligase GDP-forming subunit beta).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 8 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cb625 (11 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Allele | Type | Localization | Consequence | Mutagen | Supplier |
---|---|---|---|---|---|
la017706Tg | Transgenic insertion | Unknown | Unknown | DNA | |
sa27752 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
sa41804 | Allele with one point mutation | Unknown | Premature Stop | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
Type | InterPro ID | Name |
---|---|---|
Conserved_site | IPR017866 | Succinyl-CoA synthetase, beta subunit, conserved site |
Domain | IPR005811 | ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain |
Domain | IPR013650 | ATP-grasp fold, succinyl-CoA synthetase-type |
Family | IPR005809 | Succinate--CoA ligase-like, beta subunit |
Family | IPR034722 | Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial |
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Domain Details Per Protein
Protein | Additional Resources | Length | ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain | ATP-grasp fold, subdomain 1 | ATP-grasp fold, succinyl-CoA synthetase-type | Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial | Succinate--CoA ligase-like, beta subunit | Succinyl-CoA synthetase, beta subunit, conserved site | Succinyl-CoA synthetase-like |
---|---|---|---|---|---|---|---|---|---|
UniProtKB:A0A8M1QKY6 | InterPro | 432 | |||||||
UniProtKB:F1R7X5 | InterPro | 432 |
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Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
---|---|---|---|---|---|
mRNA |
suclg2-201
(1)
|
Ensembl | 2,390 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
Relationship | Marker Type | Marker | Accession Numbers | Citations |
---|---|---|---|---|
Contained in | BAC | CH211-225N13 | ZFIN Curated Data | |
Contained in | BAC | DKEYP-74F12 | ZFIN Curated Data | |
Encodes | EST | cb625 | Thisse et al., 2001 | |
Encodes | EST | fd44e06 | ||
Encodes | EST | IMAGE:6794135 | ||
Has Artifact | EST | fb63e03 |
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Type | Accession # | Sequence | Length (nt/aa) | Analysis |
---|---|---|---|---|
RNA | RefSeq:NM_001386309 (1) | 2299 nt | ||
Genomic | RefSeq:NW_018395298 (1) | 347088 nt | ||
Polypeptide | UniProtKB:A0A8M1QKY6 (1) | 432 aa |
- Leid, J., Gray, R., Rakita, P., Koenig, A.L., Tripathy, R., Fitzpatrick, J.A.J., Kaufman, C., Solnica-Krezel, L., Lavine, K.J. (2023) Deletion of taf1 and taf5 in zebrafish capitulate cardiac and craniofacial abnormalities associated with TAFopathies through perturbations in metabolism. Biology Open. 12(7):
- Qiu, W., Liu, X., Yang, F., Li, R., Xiong, Y., Fu, C., Li, G., Liu, S., Zheng, C. (2020) Single and joint toxic effects of four antibiotics on some metabolic pathways of zebrafish (Danio rerio) larvae. The Science of the total environment. 716:137062
- Yang, Y., Dong, F., Liu, X., Xu, J., Wu, X., Zheng, Y. (2020) Thifluzamide induces the toxic effects on zebrafish (Danio rerio) via inhibition of succinate dehydrogenase (SDH). Environmental pollution (Barking, Essex : 1987). 265:115031
- Li, J., Gao, F., Zhao, Y., He, L., Huang, Y., Yang, X., Zhou, Y., Yu, L., Zhao, Q., Dong, X. (2018) Zebrafish znfl1s regulate left-right asymmetry patterning through controlling the expression of fgfr1a. Journal of Cellular Physiology. 234(3):1987-1995
- Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
- Zheng, M., Lu, J., Zhao, D. (2017) Effects of starch-coating of magnetite nanoparticles on cellular uptake, toxicity and gene expression profiles in adult zebrafish. The Science of the total environment. 622-623:930-941
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Varshney, G.K., Lu, J., Gildea, D., Huang, H., Pei, W., Yang, Z., Huang, S.C., Schoenfeld, D.S., Pho, N., Casero, D., Hirase, T., Mosbrook-Davis, D.M., Zhang, S., Jao, L.E., Zhang, B., Woods, I.G., Zimmerman, S., Schier, A.F., Wolfsberg, T., Pellegrini, M., Burgess, S.M., and Lin, S. (2013) A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome research. 23(4):727-735
- Sato, Y., Hashiguchi, Y., and Nishida, M. (2009) Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication. BMC Evolutionary Biology. 9:127
- Wang, D., Jao, L.E., Zheng, N., Dolan, K., Ivey, J., Zonies, S., Wu, X., Wu, K., Yang, H., Meng, Q., Zhu, Z., Zhang, B., Lin, S., and Burgess, S.M. (2007) Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions. Proceedings of the National Academy of Sciences of the United States of America. 104(30):12428-12433
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