Gene

snrpc

ID
ZDB-GENE-020419-26
Name
small nuclear ribonucleoprotein polypeptide C
Symbol
snrpc Nomenclature History
Previous Names
  • chunp6909
  • U1C (1)
  • zgc:109792
Type
protein_coding_gene
Location
Chr: 6 Mapping Details/Browsers
Description
Predicted to enable pre-mRNA 5'-splice site binding activity. Acts upstream of or within regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U1 snRNP. Human ortholog(s) of this gene implicated in connective tissue disease; mixed connective tissue disease; and systemic lupus erythematosus. Orthologous to human SNRPC (small nuclear ribonucleoprotein polypeptide C).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
2 figures from 2 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
6 figures from 4 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
hi1371TgTransgenic insertionIntron 1UnknownDNA
hi3936TgTransgenic insertionIntron 1UnknownDNA
1 - 2 of 2
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Sequence Targeting Reagents
No data available
Human Disease
Associated With snrpc Human Ortholog
No data available
Associated With snrpc Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000690 Matrin/U1-C, C2H2-type zinc finger
Domain IPR003604 Matrin/U1-C-like, C2H2-type zinc finger
Domain IPR013085 U1-C, C2H2-type zinc finger
Family IPR017340 U1 small nuclear ribonucleoprotein C
Homologous_superfamily IPR036236 Zinc finger C2H2 superfamily
1 - 5 of 5
Domain Details Per Protein
Protein Additional Resources Length Matrin/U1-C, C2H2-type zinc finger Matrin/U1-C-like, C2H2-type zinc finger U1-C, C2H2-type zinc finger U1 small nuclear ribonucleoprotein C Zinc finger C2H2 superfamily
UniProtKB:Q8JGS0 InterPro 159
UniProtKB:B2GSI1 InterPro 159
1 - 2 of 2
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 6
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA snrpc-201 (1) Ensembl 917 nt
1 - 1 of 1
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-233F11ZFIN Curated Data
EncodesESTIMAGE:6906904Thisse et al., 2004
EncodescDNAMGC:109792ZFIN Curated Data
EncodescDNAMGC:192615ZFIN Curated Data
1 - 4 of 4
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanSNRPC6
Nucleotide sequence comparison (1)
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
MouseSnrpc17
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations
1 - 7 of 7
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