Gene
robo3
- ID
- ZDB-GENE-000209-4
- Name
- roundabout, axon guidance receptor, homolog 3 (Drosophila)
- Symbol
- robo3 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 10 Mapping Details/Browsers
- Description
- Predicted to enable cell-cell adhesion mediator activity. Acts upstream of or within axonogenesis and determination of ventral identity. Located in plasma membrane. Is expressed in several structures, including EVL; digestive system; fin; nervous system; and neural tube. Orthologous to human ROBO3 (roundabout guidance receptor 3).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 32 figures from 16 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cssl:d102 (31 images)
- cb503 (24 images)
Wild Type Expression Summary
- All Phenotype Data
- 11 figures from 5 publications
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Allele | Type | Localization | Consequence | Mutagen | Supplier |
---|---|---|---|---|---|
la027172Tg | Transgenic insertion | Unknown | Unknown | DNA | |
sa13775 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
tg224a | unknown | Unknown | Unknown | ENU | |
tw204 | Allele with one MNV | Unknown | Unknown | ENU | |
tx209 | Allele with one point mutation | Unknown | Premature Stop | ENU |
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Targeting Reagent | Created Alleles | Citations |
---|---|---|
MO1-robo3 | N/A | (2) |
MO2-robo3 | N/A | Challa et al., 2005 |
MO3-robo3 | N/A | Devine et al., 2008 |
MO4-robo3 | N/A | Devine et al., 2008 |
MO5-robo3 | N/A | (2) |
MO6-robo3 | N/A | Andersen, 2019 |
MO7-robo3 | N/A | Andersen, 2019 |
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Human Disease
Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
---|---|---|---|
Gaze palsy, familial horizontal, with progressive scoliosis, 1 | 607313 |
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Domain, Family, and Site Summary
Domain Details Per Protein
Protein | Additional Resources | Length | Fibronectin type III | Fibronectin type III superfamily | Immunoglobulin domain subtype | Immunoglobulin I-set | Immunoglobulin-like domain | Immunoglobulin-like domain superfamily | Immunoglobulin-like fold | Immunoglobulin subtype 2 | Immunoglobulin V-set domain | Neural and epithelial cell adhesion domain-containing protein | Roundabout homologue 1, immunoglobulin-like domain 3 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
UniProtKB:A8DZ85 | InterPro | 1389 | |||||||||||
UniProtKB:A0A8M2BJU1 | InterPro | 1424 | |||||||||||
UniProtKB:A0A2R8QRK0 | InterPro | 1420 | |||||||||||
UniProtKB:A0A8M6Z192 | InterPro | 1393 | |||||||||||
UniProtKB:F1QFK4 | InterPro | 1419 |
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Interactions and Pathways
No data available
Plasmids
No data available
Construct | Regulatory Region | Coding Sequence | Species | Tg Lines | Citations |
---|---|---|---|---|---|
Tg(hsp70l:robo3-001,EGFP) |
| 1 | (2) | ||
Tg(hsp70l:robo3-2A-Tomato-CAAX) |
| 1 | Zelina et al., 2014 | ||
Tg(hsp70l:robo3-002,EGFP) |
| 1 | (2) | ||
Tg(hsp70l:robo3_L125P-2A-Tomato-CAAX) |
| 1 | Zelina et al., 2014 | ||
Tg(hsp70l:robo3_N83P_K85R-2A-Tomato-CAAX) |
| 1 | Zelina et al., 2014 |
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Relationship | Marker Type | Marker | Accession Numbers | Citations |
---|---|---|---|---|
Contained in | BAC | DKEY-30J19 | ZFIN Curated Data | |
Contained in | BAC | DKEY-77G18 | ZFIN Curated Data | |
Contained in | BAC | DKEY-119J14 | ZFIN Curated Data | |
Encodes | EST | cb503 | Thisse et al., 2001 | |
Encodes | EST | fb78e10 | ||
Encodes | cDNA | cssl:d102 | Bushell et al., 2007 | |
Encodes | cDNA | MGC:194799 | ZFIN Curated Data | |
Encodes | cDNA | MGC:194810 | ZFIN Curated Data |
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Type | Accession # | Sequence | Length (nt/aa) | Analysis |
---|---|---|---|---|
RNA | RefSeq:NM_001328416 (1) | 5398 nt | ||
Genomic | GenBank:AL845320 (2) | 183417 nt | ||
Polypeptide | UniProtKB:A0A8M2BJU1 (1) | 1424 aa |
- Mahabaleshwar, H., Asharani, P.V., Loo, T.Y., Koh, S.Y., Pitman, M.R., Kwok, S., Ma, J., Hu, B., Lin, F., Li Lok, X., Pitson, S.M., Saunders, T.E., Carney, T.J. (2022) Slit-Robo signalling establishes a Sphingosine-1-phosphate gradient to polarise fin mesenchyme. EMBO reports. 23(8):e54464
- Mukaigasa, K., Sakuma, C., Yaginuma, H. (2021) The developmental hourglass model is applicable to the spinal cord based on single-cell transcriptomes and non-conserved cis-regulatory elements. Development, growth & differentiation. 63(7):372-391
- Picton, L.D., Bertuzzi, M., Pallucchi, I., Fontanel, P., Dahlberg, E., Björnfors, E.R., Iacoviello, F., Shearing, P.R., El Manira, A. (2021) A spinal organ of proprioception for integrated motor action feedback. Neuron. 109(7):1188-1201.e7
- Andersen, S.S.L. (2019) Real time large scale in vivo observations reveal intrinsic synchrony, plasticity and growth cone dynamics of midline crossing axons at the ventral floor plate of the zebrafish spinal cord. Journal of Integrative Neuroscience. 18:351-368
- Tao, B., Hu, H., Mitchell, K., Chen, J., Jia, H., Zhu, Z., Trudeau, V.L., Hu, W. (2018) Secretogranin-II plays a critical role in zebrafish neurovascular modeling. Journal of molecular cell biology. 10(5):388-401
- Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Takeuchi, M., Yamaguchi, S., Yonemura, S., Kakiguchi, K., Sato, Y., Higashiyama, T., Shimizu, T., Hibi, M. (2015) Type IV Collagen Controls the Axogenesis of Cerebellar Granule Cells by Regulating Basement Membrane Integrity in Zebrafish. PLoS Genetics. 11:e1005587
- Zecca, A., Dyballa, S., Voltes, A., Bradley, R., Pujades, C. (2015) The Order and Place of Neuronal Differentiation Establish the Topography of Sensory Projections and the Entry Points within the Hindbrain. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35:7475-86
- Beck, A.P., Watt, R.M., Bonner, J. (2014) Dissection and lateral mounting of zebrafish embryos: analysis of spinal cord development. Journal of visualized experiments : JoVE. (84):e50703
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